
Un effort de 15 expéditions internationales en eaux profondes a permis l’analyse de sédiments abyssaux collectés dans toutes les grandes régions océaniques, y compris les océans Arctique et Austral. Crédit : Andreas Worden
Le fond des océans est l’écosystème le moins exploré de la planète, bien qu’il couvre plus de 60% de la surface terrestre. La vie largement inconnue dans les sédiments abyssaux, des animaux benthiques aux microbes, aide à recycler et/ou à séquestrer la matière (in)organique provenant des communautés pélagiques qui sont numériquement dominées par le plancton microscopique. Les écosystèmes benthiques sous-tendent ainsi deux services écosystémiques majeurs d’importance planétairele bon fonctionnement des réseaux alimentaires océaniques et l’enfouissement du carbone à des échelles de temps géologiques, qui sont tous deux des régulateurs essentiels du climat de la Terre.
Des chercheurs du Centre de recherche norvégien (NORCE), du Centre Bjerknes pour la recherche climatique, de l’Université de Genève, ainsi que du CNRS/Genoscope et de l’IFREMER en France, ont séquencé massivement des eucaryotes DNA contained in deep-sea sediments from all major oceanic basins, and compared these new data to existing global-scale plankton datasets from the sunlit and dark water column, obtained by the Tara Oceans and Malaspina circumglobal expeditions. This provides the first unified vision of the full ocean eukaryotic biodiversity, from the surface to the deep-ocean sediment, allowing marine ecological questions to be addressed for the first time at a global scale and across the three-dimensional space of the ocean, representing a major step towards “One Ocean ecology.”

An effort of 15 deep-sea international expeditions has allowed the analysis of abyssal sediments collected in all major oceanic regions. The German research vessel Sonne was involved in two international expeditions led by scientists from the Senckenberg institute in Germany. Credit: FS Sonne 2014/2015; Expedition SO237; Vema-TRANSIT; © Thomas Walter
“With nearly 1700 samples and two billion DNA sequences from the surface to the deep-ocean floor worldwide, high-throughput environmental genomics vastly expands our capacity to study and understand deep-sea biodiversity, its connection to the water masses above and to the global carbon cycle,” says Tristan Cordier, Researcher at NORCE and Bjerknes Centre for Climate Research, Norway, and lead author of the study.
What lives in this dark and hostile environment?
By comparing sediment DNA sequences with the ones from pelagic realms, it was possible to distinguish indigenous benthic organisms from sinking plankton that had reached the seafloor from the overlying water column. Results indicate that this benthic biodiversity could be three times larger than in the water masses above; and this diversity is composed of very different taxonomic groups that are mostly unknown.

An effort of 15 deep-sea international expeditions has allowed the analysis of abyssal sediments collected in all major oceanic regions. Gorgonians and black corals at 1960 m depth in the Atlantic Ocean. Credit: © MEDWAVES/IEO/ATLAS project
“We compared our deep-sea benthic DNA sequences to all references sequences available for known eukaryotes. Our data indicates that nearly two-thirds of this benthic diversity cannot be assigned to any known group, revealing a major gap in our knowledge of marine biodiversity,” says Jan Pawlowski, Professor at the Department of Genetics and Evolution of the University of Geneva and at the Institute of Oceanology of the Polish Academy of Sciences in Sopot.
What can plankton DNA in deep-sea sediments tell us?
Analysis of the abundance and composition of plankton DNA in deep-sea sediments confirmed that polar regions are hotspots of carbon sequestration. Moreover, the composition of the plankton DNA in sediments predicts the variation of the strength of the biological pump, an ecosystem process that transfer atmospheric carbon dioxide into the deep ocean, hence regulating the global climate.
“For the first time, we can understand which members of plankton communities are contributing most to the biological pump, arguably the most fundamental ecosystem processes in the oceans,” says Colomban de Vargas, Researcher at CNRS in Roscoff, France.
How will the deep-sea be impacted by global changes?
This genomic dataset represents the first consistent snapshot of whole eukaryotic diversity in the modern ocean. It provides a unique opportunity to reconstruct ancient oceans from the DNA contained in the cumulative sediment record, to assess how climate has impacted plankton and benthic communities in the past.
“Our data will not only address global-scale questions on the biodiversity, biogeography, and connectivity of marine eukaryotes. It can also serve as a basis to reconstruct the past functioning of the biological pump from ancient sedimentary DNA archives. It would then inform on its future strength in a warmer ocean, which is key for modeling the future carbon cycle under climate change,” explains Tristan Cordier.
“Our study further demonstrates that deep-sea biodiversity research is of paramount importance. Huge numbers of unknown organisms inhabit ocean-floor sediments and must play a fundamental role in ecological and biogeochemical processes. A better knowledge of this rich diversity is crucial if we are to protect these vast, relatively pristine ecosystems from the impacts of possible future human incursions and understand the effects on it of climate change”, concludes Andrew J. Gooday, Emeritus Fellow at the National Oceanography Centre, Southampton, who was also involved in the research.
Reference: “Patterns of eukaryotic diversity from the surface to the deep-ocean sediment” by Cordier T., Barrenechea Angeles I., Henry N., Lejzerowicz F., Berney C., Morard R., Brandt A., Cambon-Bonavita M.A., Guidi L., Lombard F., Martinez Arbizu P., Massana R., Orejas C., Poulain J., Smith C.R., Wincker P., Arnaud-Haond S., Gooday A.J., de Vargas C. and Pawlowski J., 4 February 2022, Science Advances.
DOI: 10.1126/sciadv.abj9309